CL=command-line tool GUI=graphical user interface | CL | GUI | ||
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Functional tools | ||||
FEAT Version 5 | Model-based FMRI analysis with straightforward but powerful GUI: data preprocessing (including slice timing correction and MCFLIRT motion correction); first-level FILM GLM analysis with time-series prewhitening; registration to structural and standard space; and fully generalised mixed-effects group analysis using advanced Bayesian estimation techniques. | ![]() | ![]() | |
MELODIC Version 2 | Model-free FMRI analysis using Probabilistic Independent Component Analysis (PICA). MELODIC automatically estimates the number of interesting noise and signal sources in the data and because of the associated "noise model", is able to assign significances ("p-values") to the output spatial maps. | ![]() | ![]() | |
Structural tools | ||||
BET | Brain Extraction Tool - segments brain from non-brain in structural and functional data. | ![]() | ![]() | |
SUSAN | Nonlinear noise reduction. | ![]() | ![]() | |
FAST | FMRIB's Automated Segmentation Tool - brain segmentation (into different tissue types) and bias field correction. | ![]() | ![]() | |
FLIRT | FMRIB's Linear Image Registration Tool - linear inter- and intra-modal registration. | ![]() | ![]() | |
FUGUE | Unwarps geometric distortion in EPI images using B0 field maps. | ![]() | ||
SIENA | Structural brain change analysis, for estimating brain atrophy. | ![]() | ||
Other tools | ||||
FSLView | Interactive display tool for 3D and 4D data. | ![]() | ||
AVWUTILS | Misc utils for converting and processing images. | ![]() | ||
MISCVIS | Simple (non-interactive) image display utilities and a stats overlay utility | ![]() | ![]() | |
IRVA | Semi-model-free FMRI time-series analysis | ![]() | ![]() |