References for Thalamic Connectivity Atlas

Probabilistic Diffusion Tractography

H. Johansen-Berg, T.E.J. Behrens,E.L. Sillery, O. Ciccarelli, C.A.M. Wheeler-Kingshott, A.J. Thompson, S.M. Smith and P.M. Matthews.
Functional Anatomical validation and individual variation of diffusion tractography-based segmentation of the human thalamus.
Cerebral Cortex: 2005 Jan;15(1):31-9

T.E.J. Behrens, H. Johansen-Berg, M.W. Woolrich, S.M. Smith, C.A.M. Wheeler-Kingshott, P.A. Boulby, G.J. Barker, E.L. Sillery, K. Sheehan, O. Ciccarelli, A.J. Thompson, J.M. Brady, and P.M. Matthews.
Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging.
Nature Neuroscience,6(7):750-757 (2003) Online at Nat Neuro

T.E.J. Behrens, M.W. Woolrich, M. Jenkinson, H. Johansen-Berg, R.G Nunes, S. Clare, P.M. Matthews, J.M. Brady, and S.M. Smith.
Characterisation and propagation of uncertainty in diffusion weighted MR imaging.
Magnetic Resonance in Medicine, 50:1077-1088(2003) Online at MRM

Tools used for the atlas.

S.M. Smith.
Fast robust automated brain extraction.
Human Brain Mapping, 17(3):143-155, November 2002.

M. Jenkinson and S.M. Smith.
A global optimisation method for robust affine registration of brain images.
Medical Image Analysis, 5(2):143-156, June 2001.

Y. Zhang, M. Brady, and S. Smith.
Segmentation of brain MR images through a hidden Markov random field model and the expectation maximization algorithm.
IEEE Trans. on Medical Imaging, 20(1):45-57, 2001.