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---- /!\ '''Edit conflict - other version:''' ----
FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. FSL is written mainly by members of the Analysis Group, FMRIB, Oxford, UK. FSL runs on Apple and PCs (Linux and Windows (via a Virtual Machine)), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces).

To quote the relevant references for FSL tools you should look in the individual tool's manual page (or the Analysis Group publications page), and also please reference the FSL overview papers:<<BR>>
~- ''1. M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, S.M. Smith. Bayesian analysis of neuroimaging data in FSL. Neuro''''''Image, 45:S173-186, 2009.<<BR>>
2. S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. Neuro''''''Image, 23(S1):208-219, 2004.'' -~
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What's in FSL: see the [[FslTools|list of tools]] ~+ '''FMRIB Software Library &#160;v5.0 &#160;&#160;August 2012''' +~
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---- /!\ '''Edit conflict - your version:''' ----
FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. FSL is written mainly by members of the Analysis Group, FMRIB, Oxford, UK. FSL runs on Apple and PCs (Linux and Windows (via a Virtual Machine)), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces).		 Created by the [[http://www.fmrib.ox.ac.uk/analysis|Analysis Group]], FMRIB, Oxford, UK.
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To quote the relevant references for FSL tools you should look in the individual tool's manual page (or the Analysis Group publications page), and also please reference the FSL overview papers:
1) M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, S.M. Smith. Bayesian analysis of neuroimaging data in FSL. NeuroImage, 45:S173-186, 2009.
2) S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 23(S1):208-219, 2004.		 FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. It runs on Apple and PCs (both Linux, and Windows via a Virtual Machine), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces). To quote the relevant references for FSL tools you should look in the individual tools' manual pages, and also please reference the FSL overview papers:
{{{#!wiki references
[[http://www.ncbi.nlm.nih.gov/pubmed/21979382|1.]] M. Jenkinson, C.F. Beckmann, T.E. Behrens, M.W. Woolrich, S.M. Smith. FSL. !NeuroImage, 62:782-90, 2012
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[[http://www.ncbi.nlm.nih.gov/pubmed/19059349|2.]] M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, S.M. Smith. Bayesian analysis of neuroimaging data in FSL. !NeuroImage, 45:S173-86, 2009
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The [[http://www.epsrc.ac.uk/|UK EPSRC]] is the largest provider of funding for the FMRIB Analysis Group, and for this we are extremely grateful. We are also very grateful for significant financial support from [[http://www.mrc.ac.uk/|UK MRC]], [[http://www.bbsrc.ac.uk/|UK BBSRC]], [[http://www.gsk.com/|GlaxoSmithKline CIC]] and [[http://www.pfizer.co.uk/|Pfizer UK]]. [[http://www.ncbi.nlm.nih.gov/pubmed/15501092|3.]] S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. Neuro''''''Image, 23(S1):208-19, 2004
}}}
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What's in FSL: see the [[FslTools|list of tools]]. ----
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---- /!\ '''End of edit conflict''' ----  * [[FslOverview|overview of FSL tools]] ~-
  * Functional MRI: [[FEAT]]; [[MELODIC]]; [[FABBER]]
  * Structural MRI: [[BET]]; [[FAST]]; [[FIRST]]; [[FLIRT]] & [[FNIRT]]; [[FSLVBM]]; [[SIENA|SIENA & SIENAX]]
  * Diffusion MRI: [[FDT]]; [[TBSS]]
  * Other tools: [[FSLView]]; [[Randomise]]; [[DualRegression|Dual Regression]]; [[FDR]]; [[Mm]]; [[Fslutils]]; [[Atlases]]; [[SUSAN]]; [[FUGUE]]; [[MCFLIRT]]; [[FLOBS]]; [[Miscvis]]; [[POSSUM]]-~
 * [[WhatsNew|what's new in this release]]
 * [[Support|email support, tutorials, courses]] and [[FEEDS|example data]]
 * [[Contributors|contributors]]
 * [[OtherSoftware|FSL & other software]]
 * [[FslInstallation|download]], [[http://www.fmrib.ox.ac.uk/fsldownloads/patches/|patches]] and [[Licence|licence]]

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FMRIB Software Library  v5.0   August 2012

Created by the Analysis Group, FMRIB, Oxford, UK.

FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. It runs on Apple and PCs (both Linux, and Windows via a Virtual Machine), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces). To quote the relevant references for FSL tools you should look in the individual tools' manual pages, and also please reference the FSL overview papers:

1. M. Jenkinson, C.F. Beckmann, T.E. Behrens, M.W. Woolrich, S.M. Smith. FSL. NeuroImage, 62:782-90, 2012

2. M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, S.M. Smith. Bayesian analysis of neuroimaging data in FSL. NeuroImage, 45:S173-86, 2009

3. S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 23(S1):208-19, 2004

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FSL (last edited 10:54:51 03-05-2024 by MatthewWebster)