Diff for "FSL" - FslWiki

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FMRIB Software Library v5.0 September 2012

FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. It runs on Apple and PCs (both Linux, and Windows via a Virtual Machine), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces). To quote the relevant references for FSL tools you should look in the individual tools' manual pages, and also please reference the FSL overview papers:

1. M. Jenkinson, C.F. Beckmann, T.E. Behrens, M.W. Woolrich, S.M. Smith. FSL. NeuroImage, 62:782-90, 2012

2. M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, S.M. Smith. Bayesian analysis of neuroimaging data in FSL. NeuroImage, 45:S173-86, 2009

3. S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 23(S1):208-19, 2004

Overview of FSL tools
- Diffusion MRI: FDT; TBSS

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Other tools: FSLView; Randomise; Dual Regression; FDR; Mm; Fslutils; Atlases; SUSAN; FUGUE; MCFLIRT; FLOBS; Miscvis; POSSUM

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Other tools: FSLView; Randomise; Dual Regression; FDR; Mm; Fslutils; Atlases; SUSAN; FUGUE; MCFLIRT; FLOBS; Miscvis; POSSUM-~

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-Created by the [[http://www.fmrib.ox.ac.uk/analysis|Analysis Group]], FMRIB, Oxford, UK.
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- * [[FslOverview|overview of FSL tools]] ~-
  * Functional MRI: [[FEAT]]; [[MELODIC]]; [[FABBER]]
  * Structural MRI: [[BET]]; [[FAST]]; [[FIRST]]; [[FLIRT]] & [[FNIRT]]; [[FSLVBM]]; [[SIENA|SIENA & SIENAX]]
+ * [[FslOverview|Overview of FSL tools]] ~-
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  * Other tools: [[http://www.fmrib.ox.ac.uk/fsl/fslview|FSLView]]; [[Randomise]]; [[DualRegression|Dual Regression]]; [[FDR]]; [[Mm]]; [[Fslutils]]; [[Atlases]]; [[SUSAN]]; [[FUGUE]]; [[MCFLIRT]]; [[FLOBS]]; [[Miscvis]]; [[POSSUM]]-~
 * [[WhatsNew|What's new in this release]]
 * [[Support|Email support, tutorials, courses]] and [[FEEDS|example data]]
 * [[Contributors|Contributors]]
 * [[OtherSoftware|FSL plugins & other software]]
 * [[FslInstallation|Download]], [[http://www.fmrib.ox.ac.uk/fsldownloads/patches/|patches]] and [[Licence|licence]]

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