#This is the FAQ template # Make sure you "Add to" CategoryFaq <<FslToolContents>>

= Step By Step Guides =
The step by step guides are provided here as simple recipes to introduce the use of a particular type of analysis. However, FSL is a very flexible toolset and there are many variants for each kind of analysis beyond those presented here. These outlines are therefore not universal recommendations, but intended as a first introduction for learning how to use tools in FSL.

 * [[InitialProcessing|Initial Processing]] (for all modalities)

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= Structural Imaging =
 * [[BET/StepByStep|Brain Extraction (BET)]]
 * [[FLIRT/StepByStep|Registration (FLIRT/FNIRT)]]
 * [[FAST/StepByStep|Tissue-Type Segmentation and Bias-Field Correction (FAST)]]
 * [[FIRST/StepByStep|Subcortical Structure Segmentation (FIRST)]]
 * [[FSLVBM/StepByStep|Voxel-Based Morphometry (VBM)]]

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= Diffusion Imaging =
 * [[FDT/StepByStep|Diffusion Tensor Fitting (DTIFIT)]]
 * [[TBSS/StepByStep|TBSS (voxel-wise analysis of local diffusion measures)]]

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= FMRI Imaging =
 * [[FEAT/StepByStep1|First-Level Task FMRI (FEAT)]]
 * Higher-Level Task FMRI (FEAT)
 * [[DualRegression/StepByStep|Resting-State FMRI (dual regression)]]

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