#This is a template for a FSL tool section # Create subpages as ToolName/blah # Minimum required subpages are: # UserGuide # Faq # Theory # You should also create a ToolName/Contents which contains nothing but the names of the subpages in the order you wish them to appear in the menu, one per line # eg: #UserGuide #Faq #Theory # Do not include the top level page # Attach an image to this page and change the attachment line at the start to show it on the right of the page. # Remember to add this page to the appropriate category [[attachment:myimagetoshowontheright]] <> = Oxford_asl: A command line tool for quantification of perfusion from ASL data = `Oxford_asl` is part of the [[BASIL]] toolbox within FSL for the analysis of perfusion ASL data. `Oxford_asl` provides a single means to quantify CBF from ASL data, including kinetic-model inversion, absolute quantification via a calibration image and registration of the data. It provides most of the common options that someone who has raw ASL data might like to perform to extract perfusion images and thus is the normal place to begin for most users who want a command line tool. `Oxford_asl` is the main underlying tool behind the equivalent graphical user interface: `Asl_gui`. To use oxford_asl you may find you first need to pre-process your data using [[asl_file]] (see the tutorial for examples where this is relevant). More advanced users wishing to do customised kinetic analysis might want to use the basil command line tool - this is the very core of `oxford_asl` and thus the BASIL toolbox overall. ---- = Referencing = If you use oxford_asl in your research, please make sure that you reference the relevant articles on the main BASIL page. ---- [[CategoryBASIL]]