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| FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. FSL is written mainly by members of the Analysis Group, FMRIB, Oxford, UK. FSL runs on Apple and PCs (Linux and Windows), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces). | |
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| To quote the relevant references for FSL tools you should look in the individual tool's manual page (or the Analysis Group publications page), and also please reference the FSL overview papers: 1) M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, S.M. Smith. Bayesian analysis of neuroimaging data in FSL. NeuroImage, 45:S173-186, 2009. 2) S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 23(S1):208-219, 2004. |
'''Announcing the [[http://fsl.fmrib.ox.ac.uk/fslcourse/current.html|2015 FSL Course]], 8-12 June 2015, Waikiki Beach, Hawaii, USA''' |
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| The UK EPSRC is the largest provider of funding for the FMRIB Analysis Group, and for this we are extremely grateful. We are also very grateful for significant financial support from UK MRC, UK BBSRC, GlaxoSmithKline CIC and Pfizer UK. | ---- = FMRIB Software Library v5.0 = Created by the [[http://www.fmrib.ox.ac.uk/analysis|Analysis Group]], FMRIB, Oxford, UK. |
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| What's in FSL: see the list of tools. | ---- FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. It runs on Apple and PCs (both Linux, and Windows via a Virtual Machine), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces). To quote the relevant references for FSL tools you should look in the individual tools' manual pages, and also please reference one or more of the FSL overview papers: {{{#!wiki references [[http://www.ncbi.nlm.nih.gov/pubmed/15501092|1.]] S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. Neuro''''''Image, 23(S1):208-19, 2004 [[http://www.ncbi.nlm.nih.gov/pubmed/19059349|2.]] M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, S.M. Smith. Bayesian analysis of neuroimaging data in FSL. !NeuroImage, 45:S173-86, 2009 [[http://www.ncbi.nlm.nih.gov/pubmed/21979382|3.]] M. Jenkinson, C.F. Beckmann, T.E. Behrens, M.W. Woolrich, S.M. Smith. FSL. !NeuroImage, 62:782-90, 2012 }}} ---- * [[FslOverview|Overview of FSL tools]] * ~-Functional MRI: [[FEAT]], [[MELODIC]], [[FABBER]], [[BASIL]], [[verbena|VERBENA]] -~ * ~-Structural MRI: [[BET]], [[FAST]], [[FIRST]], [[FLIRT]] & [[FNIRT]], [[FSLVBM]], [[SIENA|SIENA & SIENAX]], [[fsl_anat]] -~ * ~-Diffusion MRI: [[FDT]], [[TBSS]], [[EDDY]], [[TOPUP]] -~ * ~-GLM / Stats: [[GLM|GLM general advice]], [[Randomise]], [[Cluster]], [[FDR]], [[DualRegression|Dual Regression]], [[Mm]], [[FLOBS]] -~ * ~-Other: [[http://fsl.fmrib.ox.ac.uk/fsl/fslview/|FSLView]], [[Fslutils]], [[Atlases]], [[Atlasquery]], [[SUSAN]], [[FUGUE]], [[MCFLIRT]], [[Miscvis]], [[POSSUM]], [[baycest|BayCEST]] -~ * [[WhatsNew|What's new in this release]] * [[Support|Support: Email forum, FAQ, tutorials]] * [[http://www.fmrib.ox.ac.uk/fslcourse|FSL Course: lecture slides, practicals and example data]] * [[Contributors]] * [[OtherSoftware|Related software & FSL plugins]] * [[FslInstallation|Download]], [[FslInstallation/Patches|patches]] and [[Licence|licence]] |
Announcing the 2015 FSL Course, 8-12 June 2015, Waikiki Beach, Hawaii, USA
FMRIB Software Library v5.0
Created by the Analysis Group, FMRIB, Oxford, UK.
FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. It runs on Apple and PCs (both Linux, and Windows via a Virtual Machine), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces). To quote the relevant references for FSL tools you should look in the individual tools' manual pages, and also please reference one or more of the FSL overview papers:
1. S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 23(S1):208-19, 2004
2. M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, S.M. Smith. Bayesian analysis of neuroimaging data in FSL. NeuroImage, 45:S173-86, 2009
3. M. Jenkinson, C.F. Beckmann, T.E. Behrens, M.W. Woolrich, S.M. Smith. FSL. NeuroImage, 62:782-90, 2012