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| * Other tools: [[http://www.fmrib.ox.ac.uk/fsl/fslview|FSLView]], [[Randomise]], [[DualRegression|Dual Regression]], [[FDR]], [[Mm]], [[Fslutils]], [[Atlases]], [[Atlasquery]], [[SUSAN]], [[FUGUE]], [[MCFLIRT]], [[FLOBS]], [[Miscvis]], [[POSSUM]], [[Cluster]]-~ | * GLM / stats: [[GLM|GLM general advice]], [[Randomise]], [[Cluster]], [[FDR]], [[DualRegression|Dual Regression]], [[Mm]], [[FLOBS]] * Other: [[http://www.fmrib.ox.ac.uk/fsl/fslview|FSLView]], [[Fslutils]], [[Atlases]], [[Atlasquery]], [[SUSAN]], [[FUGUE]], [[MCFLIRT]], [[Miscvis]], [[POSSUM]]-~ |
FMRIB Software Library v5.0 September 2012
*** Announcement: FSL & FreeSurfer course, 10-14 June 2013, Seattle ***
Created by the Analysis Group, FMRIB, Oxford, UK.
FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. It runs on Apple and PCs (both Linux, and Windows via a Virtual Machine), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces). To quote the relevant references for FSL tools you should look in the individual tools' manual pages, and also please reference the FSL overview papers:
1. M. Jenkinson, C.F. Beckmann, T.E. Behrens, M.W. Woolrich, S.M. Smith. FSL. NeuroImage, 62:782-90, 2012
2. M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, S.M. Smith. Bayesian analysis of neuroimaging data in FSL. NeuroImage, 45:S173-86, 2009
3. S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 23(S1):208-19, 2004