Diff for "FSL" - FslWiki

Differences between revisions 42 and 43

FMRIB Software Library v5.0 September 2012

Created by the Analysis Group, FMRIB, Oxford, UK.

FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. It runs on Apple and PCs (both Linux, and Windows via a Virtual Machine), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces). To quote the relevant references for FSL tools you should look in the individual tools' manual pages, and also please reference the FSL overview papers:

1. M. Jenkinson, C.F. Beckmann, T.E. Behrens, M.W. Woolrich, S.M. Smith. FSL. NeuroImage, 62:782-90, 2012

2. M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, S.M. Smith. Bayesian analysis of neuroimaging data in FSL. NeuroImage, 45:S173-86, 2009

3. S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 23(S1):208-19, 2004

Overview of FSL tools
- Functional MRI: FEAT, MELODIC, FABBER, BASIL
- Structural MRI: BET, FAST, FIRST, FLIRT & FNIRT, FSLVBM, SIENA & SIENAX, fsl_anat
- Diffusion MRI: FDT, TBSS, EDDY, TOPUP
- GLM / Stats: GLM general advice, Randomise, Cluster, FDR, Dual Regression, Mm, FLOBS
- Other: FSLView, Fslutils, Atlases, Atlasquery, SUSAN, FUGUE, MCFLIRT, Miscvis, POSSUM
What's new in this release
Support: Email forum, FAQ, tutorials
FSL Course: lecture slides, practicals and example data
Contributors
Related software & FSL plugins
Download, patches and licence

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-~+ '''FMRIB Software Library &#160;v5.0 &#160;&#160;September 2012''' +~
+~+'''FMRIB Software Library  v5.0   September 2012''' +~
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- * [[FslOverview|Overview of FSL tools]] ~-
  * Functional MRI: [[FEAT]], [[MELODIC]], [[FABBER]], [[BASIL]]
  * Structural MRI: [[BET]], [[FAST]], [[FIRST]], [[FLIRT]] & [[FNIRT]], [[FSLVBM]], [[SIENA|SIENA & SIENAX]], [[fsl_anat]]
  * Diffusion MRI: [[FDT]], [[TBSS]], [[EDDY]], [[TOPUP]]
  * GLM / Stats: [[GLM|GLM general advice]], [[Randomise]], [[Cluster]], [[FDR]], [[DualRegression|Dual Regression]], [[Mm]], [[FLOBS]]
  * Other: [[http://fsl.fmrib.ox.ac.uk/fsl/fslview/|FSLView]], [[Fslutils]], [[Atlases]], [[Atlasquery]], [[SUSAN]], [[FUGUE]], [[MCFLIRT]], [[Miscvis]], [[POSSUM]]-~
+ * [[FslOverview|Overview of FSL tools]]
  * ~-Functional MRI: [[FEAT]], [[MELODIC]], [[FABBER]], [[BASIL]] -~
  * ~-Structural MRI: [[BET]], [[FAST]], [[FIRST]], [[FLIRT]] & [[FNIRT]], [[FSLVBM]], [[SIENA|SIENA & SIENAX]], [[fsl_anat]] -~
  * ~-Diffusion MRI: [[FDT]], [[TBSS]], [[EDDY]], [[TOPUP]] -~
  * ~-GLM / Stats: [[GLM|GLM general advice]], [[Randomise]], [[Cluster]], [[FDR]], [[DualRegression|Dual Regression]], [[Mm]], [[FLOBS]] -~
  * ~-Other: [[http://fsl.fmrib.ox.ac.uk/fsl/fslview/|FSLView]], [[Fslutils]], [[Atlases]], [[Atlasquery]], [[SUSAN]], [[FUGUE]], [[MCFLIRT]], [[Miscvis]], [[POSSUM]]-~
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- * [[http://www.fmrib.ox.ac.uk/fslcourse|FSL Course: tutorials and example data]]
 * [[Contributors|Contributors]]
+ * [[http://www.fmrib.ox.ac.uk/fslcourse|FSL Course: lecture slides, practicals and example data]]
 * [[Contributors]]