|
Size: 2602
Comment:
|
Size: 2645
Comment: Added links to VERBENA and BayCEST
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 22: | Line 22: |
| * ~-Functional MRI: [[FEAT]], [[MELODIC]], [[FABBER]], [[BASIL]] -~ | * ~-Functional MRI: [[FEAT]], [[MELODIC]], [[FABBER]], [[BASIL]], [[verbena|VERBENA]] -~ |
| Line 26: | Line 26: |
| * ~-Other: [[http://fsl.fmrib.ox.ac.uk/fsl/fslview/|FSLView]], [[Fslutils]], [[Atlases]], [[Atlasquery]], [[SUSAN]], [[FUGUE]], [[MCFLIRT]], [[Miscvis]], [[POSSUM]]-~ | * ~-Other: [[http://fsl.fmrib.ox.ac.uk/fsl/fslview/|FSLView]], [[Fslutils]], [[Atlases]], [[Atlasquery]], [[SUSAN]], [[FUGUE]], [[MCFLIRT]], [[Miscvis]], [[POSSUM]], [[baycest|BayCEST]] -~ |
FMRIB Software Library v5.0
Created by the Analysis Group, FMRIB, Oxford, UK.
FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. It runs on Apple and PCs (both Linux, and Windows via a Virtual Machine), and is very easy to install. Most of the tools can be run both from the command line and as GUIs ("point-and-click" graphical user interfaces). To quote the relevant references for FSL tools you should look in the individual tools' manual pages, and also please reference one or more of the FSL overview papers:
1. M. Jenkinson, C.F. Beckmann, T.E. Behrens, M.W. Woolrich, S.M. Smith. FSL. NeuroImage, 62:782-90, 2012
2. M.W. Woolrich, S. Jbabdi, B. Patenaude, M. Chappell, S. Makni, T. Behrens, C. Beckmann, M. Jenkinson, S.M. Smith. Bayesian analysis of neuroimaging data in FSL. NeuroImage, 45:S173-86, 2009
3. S.M. Smith, M. Jenkinson, M.W. Woolrich, C.F. Beckmann, T.E.J. Behrens, H. Johansen-Berg, P.R. Bannister, M. De Luca, I. Drobnjak, D.E. Flitney, R. Niazy, J. Saunders, J. Vickers, Y. Zhang, N. De Stefano, J.M. Brady, and P.M. Matthews. Advances in functional and structural MR image analysis and implementation as FSL. NeuroImage, 23(S1):208-19, 2004