⇤ ← Revision 1 as of 15:06:33 13-08-2012
1685
Comment: Local Merge - 'FslDev'
|
1822
Local Merge - 'FslDev'
|
Deletions are marked like this. | Additions are marked like this. |
Line 13: | Line 13: |
* [[fsl_anat]] - general anatomical pipeline script | |
Line 37: | Line 38: |
* [[lesion_filling]] - tool for filling lesion masks with non-lesion intensities |
Functional MRI
FEAT - model-based analysis, e.g., for task FMRI
MELODIC - model-free ICA-based analysis, e.g., for resting FMRI
FABBER - dual-echo (ASL/BOLD) perfusion FMRI
Structural MRI
BET - brain extraction
FAST - tissue-type segmentation
FIRST - segmentation of subcortical structures
FSLVBM - voxelwise analysis of multi-subject grey-matter density
SIENA & SIENAX - longitudinal and cross-sectional analysis of structural changes
fsl_anat - general anatomical pipeline script
Diffusion MRI
FDT - diffusion MRI preprocessing, tensor fitting and tractography
TBSS - voxelwise analysis of multi-subject diffusion MRI datasets
Perfusion MRI
BASIL - perfusion quantification using arterial spin labelling
Other tools
FSLView - 3D/4D image, timeseries and surface viewer
Randomise - permutation-based thresholding, including TFCE
Dual Regression - Generating subject-specific maps from a group-ICA
Nets - various tools relating to network/connectivity analysis
FDR - false discovery rate thresholding
Mm - mixture-model thresholding
Fslutils - miscellaneous command-line programs (including fslmaths and fslstats)
Atlases - various atlases included with FSL
SUSAN - nonlinear image noise reduction
FUGUE - fieldmap-based EPI distortion correction
MCFLIRT - head-motion correction
FLOBS - flexible haemodynamic basis functions
Miscvis - programs for making summary pictures
lesion_filling - tool for filling lesion masks with non-lesion intensities
POSSUM - FMRI/MRI image simulator